Data quality metrics extracted from 4gpk.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4GPK at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SOLEIL BEAMLINE PROXIMA 1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SOLEIL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
PROXIMA 1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2011-11-27
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.98011
Software
Data collection
_software.classification
ADSC (Quantum)
Data scaling
_software.classification
XSCALE (Wolfgang Kabsch)
Phasing #1
_software.classification
SHELX (George M. Sheldrick; gsheldr@shelx.uni-ac.gwdg.de)
Phasing #2
_software.classification
RESOLVE (2.13; 23-Aug-2008; Thomas C. Terwilliger; terwilliger@lanl.gov)
Phasing #3
_software.classification
SHELXD
Refinement #1
_software.classification
PHENIX (1.8_1069)
Refinement #2
_software.classification
BUSTER-TNT (Gerard Bricogne; buster-develop@GlobalPhasing.com)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
122.24 133.35 137.50 108.25 104.83 103.83
Wavelength
_diffrn_radiation_wavelength.wavelength
0.979180.98011 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 3.280
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.090 9.140 3.090
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.045 0.029 0.643
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs
132663 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
16.87 40.60 1.95
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.0 95.4 94.5
Multiplicity
_reflns.pdbx_redundancy
3.9 - -
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4GPK
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-08-21
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
29.7 - 3.200 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2695 / 0.2994
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD