Data quality metrics extracted from 3gpv.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3GPV at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NSLS BEAMLINE X29A
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NSLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X29A
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2009-02-18
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.979
Software
Data collection
_software.classification
CBASS
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing #1
_software.classification
SHELXD
Phasing #2
_software.classification
SHARP
Model building
_software.classification
ARP/wARP
Refinement
_software.classification
CNS (1.1)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
38.091 39.175 52.283 85.64 85.13 78.73
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97900 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
37.260 1.960
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.900 1.900
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.142 0.432
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
21114 942
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
15.90 2.00
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
90.7 49.1
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
8.8 3.8
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
3GPV
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2009-03-23
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
37.3 - 1.900 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2680 / 0.2880
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD