Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | NSLS-II BEAMLINE 17-ID-2 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | NSLS-II Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | 17-ID-2 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2022-05-28 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS EIGER X 16M The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.97934 Comma separated list of wavelengths or wavelength range. |
Software | |
Data processing #1 _software.classification | autoPROC (1.0.5 20221121) The classification of the program according to its |
Data processing #2 _software.classification | TRUNCATE (7.1.018) The classification of the program according to its |
Data reduction _software.classification | XDS (Jan 10, 2022 (BUILT 20220220)) The classification of the program according to its |
Data scaling _software.classification | Aimless (0.7.7) The classification of the program according to its |
Phasing _software.classification | PHASER (1.20.1_4487) The classification of the program according to its |
Model building _software.classification | Coot (0.9.6) The classification of the program according to its |
Refinement _software.classification | PHENIX (1.20.1_4487) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 1 21 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 80.544 Unit-cell length a corresponding to the structure reported in 60.684 Unit-cell length b corresponding to the structure reported in 88.704 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 111.1 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.97934 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 75.133 The largest value in angstroms for the interplanar spacings | 75.133 The highest value in angstroms for the interplanar spacings | 2.044 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.009 The smallest value in angstroms for the interplanar spacings | 5.452 The smallest value in angstroms for the interplanar spacings | 2.009 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.207 The R value for merging intensities satisfying the observed | 0.084 The value of Rmerge(I) for reflections classified as 'observed' | 3.651 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.227 The redundancy-independent merging R factor value Rrim, | 0.092 The redundancy-independent merging R factor value Rrim, | 3.985 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.092 The precision-indicating merging R factor value Rpim, | 0.038 The precision-indicating merging R factor value Rpim, | 1.583 The precision-indicating merging R factor value Rpim, |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_all | 320683 Total number of measured reflections. | 16913 The total number of reflections measured for this | 16164 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_all | 53518 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 2786 The total number of measured reflections which are symmetry- | 2638 The total number of measured reflections which are symmetry- |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 4.97 The mean of the ratio of the intensities to their | 13.32 The ratio of the mean of the intensities of the reflections | 0.68 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 100.0 The percentage of geometrically possible reflections represented | 99.9 The percentage of geometrically possible reflections represented | 100.0 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 6.0 Overall redundancy for this data set. | 6.1 Redundancy for the current shell. | 6.1 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.985 The Pearson's correlation coefficient expressed as a decimal value | 0.978 The Pearson's correlation coefficient expressed as a decimal value | 0.311 The Pearson's correlation coefficient expressed as a decimal value |
Anomalous completeness _reflns.pdbx_percent_possible_anomalous _reflns_shell.pdbx_percent_possible_anomalous | 99.3 Completeness (as a percentage) of symmetry-unique | 99.6 Completeness (as a percentage) of symmetry-unique | 99.4 Completeness (as a percentage) of symmetry-unique |
Anomalous multiplicity _reflns.pdbx_redundancy_anomalous _reflns_shell.pdbx_redundancy_anomalous | 3.1 The overall redundancy of anomalous difference data | 3.2 The redundancy of anomalous difference data within the | 3.1 The redundancy of anomalous difference data within the |
CC(ano) _reflns.pdbx_CC_half_anomalous _reflns_shell.pdbx_CC_half_anomalous | -0.096 The overall correlation coefficient between two randomly | -0.089 The correlation coefficient within the spherical shell | -0.009 The correlation coefficient within the spherical shell |
|DANO|/σ(DANO) _reflns.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous | 0.746 The overall mean ratio of absolute anomalous intensity | 0.551 The mean ratio of absolute anomalous intensity | 0.756 The mean ratio of absolute anomalous intensity |
Refinement | |
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PDB entry ID _entry.id | 8GM4 |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2023-03-24 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 47.7 - 2.120 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.2071 / 0.2376 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | 7SHQ |