Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | MAX II BEAMLINE I911-3 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | MAX II Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | I911-3 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | CCD The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2015-06-18 The date of data collection. |
Detector _diffrn_detector.type | MARMOSAIC 225 mm CCD The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.91949 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | XDS The classification of the program according to its |
Data scaling _software.classification | SCALA (3.3.22) The classification of the program according to its |
Phasing _software.classification | PHASER (2.5.6) The classification of the program according to its |
Refinement _software.classification | PHENIX The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 1 2 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 46.717 Unit-cell length a corresponding to the structure reported in 47.715 Unit-cell length b corresponding to the structure reported in 116.713 Unit-cell length c corresponding to the structure reported in 90.00 Unit-cell angle alpha of the reported structure in degrees. 93.79 Unit-cell angle beta of the reported structure in degrees. 90.00 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.91949 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 116.457 The largest value in angstroms for the interplanar spacings | 46.615 The highest value in angstroms for the interplanar spacings | 2.060 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.948 The smallest value in angstroms for the interplanar spacings | 6.170 The smallest value in angstroms for the interplanar spacings | 1.950 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs | 0.089 The R sym value as a decimal number. | 0.040 The value of Rmerge(I) for reflections classified as 'observed' | 0.468 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.096 The redundancy-independent merging R factor value Rrim, | 0.044 The redundancy-independent merging R factor value Rrim, | 0.502 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.035 The precision-indicating merging R factor value Rpim, | 0.016 The precision-indicating merging R factor value Rpim, | 0.182 The precision-indicating merging R factor value Rpim, |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_all | 286755 Total number of measured reflections. | 9067 The total number of reflections measured for this | 41322 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 37848 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 1276 The total number of measured reflections classified as 'observed' | 5450 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 16.20 The mean of the ratio of the intensities to their | 14.90 The ratio of the mean of the intensities of the reflections | 1.60 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 100.0 The percentage of geometrically possible reflections represented | 99.8 The percentage of geometrically possible reflections represented | 100.0 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 7.6 Overall redundancy for this data set. | 7.1 Redundancy for the current shell. | 7.6 Redundancy for the current shell. |
CC(1/2) | - | - | - |
Refinement | |
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PDB entry ID _entry.id | 6GL4 |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2018-05-22 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 46.6 - 1.948 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1628 / 0.1985 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | 3TDJ |