Data quality metrics extracted from 5gds.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5GDS at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU RUH2R
Temperature [K]
_diffrn.ambient_temp
293
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
1996-01-10
Detector
_diffrn_detector.type
RIGAKU RAXIS II
Software
Data reduction #1
_software.classification
MOSFLM
Data reduction #2
_software.classification
CCP4
Data scaling
_software.classification
CCP4
Phasing
_software.classification
CCP4
Model building
_software.classification
CCP4
Refinement
_software.classification
TNT (5E)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
71.9 72.8 73.3 90.0 100.7 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
20.000 2.170
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.100 2.100
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.072 0.380
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
21615 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
5.80 2.00
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.4 98.7
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.5 2.5
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5GDS
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
1997-07-17
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 2.100 Å
Rwork
_refine.ls_R_factor_R_work
0.1760
WARNING: no Rfree given (but Rwork)!?
Structure solution method
_refine.pdbx_method_to_determine_struct
THE STRUCTURE WAS ANALYZED BY DIFFERENCE FOURIER TECHNIQUES
Starting model
_refine.pdbx_starting_model
PDB ENTRY 1HAH (J. VIJAYALAKSHMI ET AL., 1994, PROTEIN SCI. 3,2254-71)