Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | LNLS BEAMLINE D03B-MX1 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | LNLS Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | D03B-MX1 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | CCD The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2011-10-17 The date of data collection. |
Detector _diffrn_detector.type | MAR CCD 165 mm The make, model or name of the detector device used. |
Software | |
Data collection _software.classification | MAR345 The classification of the program according to its |
Data reduction _software.classification | MOSFLM (Andrew G.W. Leslie; andrew@mrc-lmb.cam.ac.uk) The classification of the program according to its |
Data scaling _software.classification | SCALA (3.3.20; 2011/05/18; Phil R. Evans; pre@mrc-lmb.cam.ac.uk) The classification of the program according to its |
Phasing _software.classification | MOLREP (Alexei Vaguine; alexei@ysbl.york.ac.uk) The classification of the program according to its |
Refinement _software.classification | REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | H 3 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 78.29 Unit-cell length a corresponding to the structure reported in 78.29 Unit-cell length b corresponding to the structure reported in 36.91 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 120.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 1.46100 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 39.145 The largest value in angstroms for the interplanar spacings | 24.968 The highest value in angstroms for the interplanar spacings | 2.640 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.502 The smallest value in angstroms for the interplanar spacings | 7.910 The smallest value in angstroms for the interplanar spacings | 2.502 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs | 0.076 The R sym value as a decimal number. | 0.041 The value of Rmerge(I) for reflections classified as 'observed' | 0.470 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas | - | - | - |
Rpim | - | - | - |
Total number of observations _reflns_shell.number_measured_all | - | 109 The total number of reflections measured for this | 636 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_all | 2607 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 59 The total number of measured reflections which are symmetry- | 396 The total number of measured reflections which are symmetry- |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 8.80 The mean of the ratio of the intensities to their | 13.60 The ratio of the mean of the intensities of the reflections | 1.00 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 89.3 The percentage of geometrically possible reflections represented | 63.8 The percentage of geometrically possible reflections represented | 92.5 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 1.7 Overall redundancy for this data set. | 1.8 Redundancy for the current shell. | 1.6 Redundancy for the current shell. |
CC(1/2) | - | - | - |
Refinement | |
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PDB entry ID _entry.id | 4GBI |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2012-07-27 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 39.1 - 2.502 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1525 / 0.2023 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | PDB ENTRY 1ZEH |