Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | MAD SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | SSRL BEAMLINE BL11-1 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | SSRL Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | BL11-1 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | PIXEL The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2012-06-27 The date of data collection. |
Detector _diffrn_detector.type | DECTRIS PILATUS 6M The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.91837,0.97949,0.97882 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | XDS The classification of the program according to its |
Data scaling _software.classification | XSCALE (March 15, 2012; Wolfgang Kabsch) The classification of the program according to its |
Phasing #1 _software.classification | SHELX (George M. Sheldrick; gsheldr@shelx.uni-ac.gwdg.de) The classification of the program according to its |
Phasing #2 _software.classification | SHARP (Eric de La Fortelle; sharp-develop@globalphasing.com) The classification of the program according to its |
Phasing #3 _software.classification | SHELXD The classification of the program according to its |
Model building _software.classification | MolProbity (3beta29; D.C. & J.S. Richardson lab; molprobity@kinemage.biochem.duke.edu) The classification of the program according to its |
Refinement _software.classification | REFMAC (5.5.0110; Garib N. Murshudov; garib@ysbl.york.ac.uk) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 21 21 2 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 87.042 Unit-cell length a corresponding to the structure reported in 93.255 Unit-cell length b corresponding to the structure reported in 27.654 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.91837 The radiation wavelength in angstroms. 0.97949 The radiation wavelength in angstroms. 0.97882 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 27.704 The largest value in angstroms for the interplanar spacings | 27.704 The highest value in angstroms for the interplanar spacings | 1.750 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.690 The smallest value in angstroms for the interplanar spacings | 3.630 The smallest value in angstroms for the interplanar spacings | 1.690 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.035 The R value for merging intensities satisfying the observed | 0.017 The value of Rmerge(I) for reflections classified as 'observed' | 0.458 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.047 The redundancy-independent merging R factor value Rrim, | 0.022 The redundancy-independent merging R factor value Rrim, | 0.611 The redundancy-independent merging R factor value Rrim, |
Rpim | - | - | - |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_obs | 90460 Total number of measured reflections. | 8782 The number of reflections classified as 'observed' | 9035 The number of reflections classified as 'observed' |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 25699 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 4507 The total number of measured reflections classified as 'observed' | 4653 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 13.99 The mean of the ratio of the intensities to their | 38.40 The ratio of the mean of the intensities of the reflections | 1.90 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 95.1 The percentage of geometrically possible reflections represented | 91.2 The percentage of geometrically possible reflections represented | 96.4 The percentage of geometrically possible reflections represented |
Multiplicity | - | - | - |
CC(1/2) | - | - | - |
Refinement | |
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PDB entry ID _entry.id | 4G5A |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2012-07-17 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 27.7 - 1.690 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1776 / 0.2086 |
Structure solution method _refine.pdbx_method_to_determine_struct | MAD |