Data quality metrics extracted from 8frk.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 8FRK at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NSLS-II BEAMLINE 17-ID-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NSLS-II
Beamline
_diffrn_source.pdbx_synchrotron_beamline
17-ID-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2022-03-28
Detector
_diffrn_detector.type
DECTRIS EIGER X 16M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.920105
Software
Data reduction
_software.classification
XDS (Jan 10, 2022 (BUILT 20220110))
Data scaling #1
_software.classification
Aimless (0.7.7)
Data scaling #2
_software.classification
STARANISO (2.3.79 (20211010))
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.20rc3_4406)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 65
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
109.174 109.174 48.659 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.92010 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
94.547 1.859
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.606 1.606
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.062 0.851
Rmeas
_reflns.pdbx_Rrim_I_all
0.073 -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.038 0.534
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
23244 1163
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
9.30 -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
94.3 68.6
Multiplicity
_reflns.pdbx_redundancy
7.0 -
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.999 0.676

Refinement
PDB entry ID
_entry.id
8FRK
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2023-01-07
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
47.3 - 1.610 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2172 / 0.2511
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given