Data quality metrics extracted from 5fdc.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5FDC at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-12-10
Detector
_diffrn_detector.type
RIGAKU SATURN 944
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.5418
Software
Data reduction #1
_software.classification
d*TREK
Data reduction #2
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Refinement
_software.classification
CNS
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
42.124 41.427 71.996 90.00 104.34 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
20.000 1.810
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.750 1.750
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.068 0.258
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
23860 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
15.26 -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.3 88.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.7 3.5
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5FDC
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-12-16
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 1.750 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1700 / 0.2040
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS
Starting model
_refine.pdbx_starting_model
1CA2