Data quality metrics extracted from 5esd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5ESD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Australian Synchrotron
Beamline
_diffrn_source.pdbx_synchrotron_beamline
MX2
Temperature [K]
_diffrn.ambient_temp
110
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2011-11-10
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.95369
Software
Data scaling #1
_software.classification
Aimless (0.1.27)
Data scaling #2
_software.classification
XDS
Phasing
_software.classification
PHASER
Refinement #1
_software.classification
PHENIX
Refinement #2
_software.classification
REFMAC
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
98.625 138.657 165.386 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.95369 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
19.811 19.810 2.290
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.250 12.320 2.250
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.430 0.045 6.410
  Rmeas - - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.066 0.007 1.054
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
4650184 21820 197267
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
107885 573 5270
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
14.70 83.80 1.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.8 76.8 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
43.1 38.1 37.4
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.997 1.000 0.615

Refinement
PDB entry ID
_entry.id
5ESD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-11-16
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
19.8 - 2.250 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2105 / 0.2354
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given