Data quality metrics extracted from 5eqf.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5EQF at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 21-ID-G
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
21-ID-G
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2014-06-22
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97856
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
PHASER (2.5.6)
Refinement
_software.classification
PHENIX (phenix.refine: 1.9_1690)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
115.565 82.691 108.567 90.00 112.64 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97856 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
30.400 30.400 2.230
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.145 4.630 2.145
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.064 0.040 0.419
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.069 0.043 0.458
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.025 0.016 0.181
Total number of observations
_reflns.pdbx_number_measured_all
376968 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
50316 5241 4637
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
10.60 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.5 99.2 90.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.5 7.4 5.8
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.999 0.956

Refinement
PDB entry ID
_entry.id
5EQF
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-11-12
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
28.2 - 2.145 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1765 / 0.2281
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
5EQD