Data quality metrics extracted from 5eod.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5EOD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I04
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I04
Temperature [K]
_diffrn.ambient_temp
80
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2012-10-12
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M-F
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.976
Software
Data reduction
_software.classification
XDS
Phasing
_software.classification
PHASER
Refinement #1
_software.classification
REFMAC (5.8.0131)
Refinement #2
_software.classification
PHENIX (1.10.1-2155)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 43 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
81.065 81.065 253.084 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97600 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
47.400 3.130
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.970 2.970
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.149 0.714
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
18287 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
12.50 3.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.8 98.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
9.8 9.1
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5EOD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-11-10
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
47.4 - 3.100 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1895 / 0.2739