Data quality metrics extracted from 5emk.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5EMK at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 21-ID-D
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
21-ID-D
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2012-08-03
Detector
_diffrn_detector.type
MAR scanner 300 mm plate
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.07816
Software
Data reduction
_software.classification
iMOSFLM
Data scaling
_software.classification
Aimless (0.1.27)
Refinement
_software.classification
REFMAC (5.7.0029)
General information
Spacegroup name
_symmetry.space_group_name_H-M
I 2 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
102.79 137.75 178.52 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.07816 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
54.630 54.630 2.590
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.520 11.270 2.520
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.055 0.021 0.674
  Rmeas - - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.025 0.010 0.310
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
239412 2513 17734
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
42869 529 3127
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
19.40 54.50 2.40
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.4 98.6 98.7
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.6 4.8 5.7
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.999 0.999 0.884

Refinement
PDB entry ID
_entry.id
5EMK
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-11-06
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
54.5 - 2.520 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2004 / 0.2618