Data quality metrics extracted from 6ekx.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6EKX at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ALBA BEAMLINE XALOC
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ALBA
Beamline
_diffrn_source.pdbx_synchrotron_beamline
XALOC
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2015-12-17
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9792
Software
Data reduction
_software.classification
XDS (0.72)
Data scaling
_software.classification
Aimless (0.5.32)
Phasing
_software.classification
MOLREP (11.5.02)
Refinement
_software.classification
REFMAC (5.8.0158)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
51.086 57.799 60.691 90.00 109.89 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97920 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
48.040 1.140
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.130 1.130
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.066 0.605
  Rmeas - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.028 0.369
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
124527 5458
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
13.10 2.00
Completeness [%]
_reflns.percent_possible_obs
99.0 -
Multiplicity
_reflns.pdbx_redundancy
5.9 -
CC(1/2)
_reflns.pdbx_CC_half
0.999 -

Refinement
PDB entry ID
_entry.id
6EKX
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-09-27
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
48.0 - 1.130 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1660 / 0.1754
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS
Starting model
_refine.pdbx_starting_model
5OXU