Experiment | |
---|---|
Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | ALS BEAMLINE 5.0.2 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | ALS Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | 5.0.2 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 150 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | CCD The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2010-01-27 The date of data collection. |
Detector _diffrn_detector.type | ADSC QUANTUM 315 The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 1.0 Comma separated list of wavelengths or wavelength range. |
Software | |
Data scaling _software.classification | SCALA (3.3.15) The classification of the program according to its |
Phasing _software.classification | PHASER (2.1.4) The classification of the program according to its |
Model building _software.classification | Coot (0.8.1) The classification of the program according to its |
Refinement _software.classification | BUSTER-TNT The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | C 1 2 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 379.122 Unit-cell length a corresponding to the structure reported in 59.720 Unit-cell length b corresponding to the structure reported in 95.587 Unit-cell length c corresponding to the structure reported in 90.00 Unit-cell angle alpha of the reported structure in degrees. 95.67 Unit-cell angle beta of the reported structure in degrees. 90.00 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 1.00000 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 95.120 The largest value in angstroms for the interplanar spacings | 95.119 The highest value in angstroms for the interplanar spacings | 2.340 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.220 The smallest value in angstroms for the interplanar spacings | 7.010 The smallest value in angstroms for the interplanar spacings | 2.220 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs | 0.079 The R sym value as a decimal number. | 0.037 The value of Rmerge(I) for reflections classified as 'observed' | 0.498 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all | 0.114 The redundancy-independent merging R factor value Rrim, | - | - |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.062 The precision-indicating merging R factor value Rpim, | 0.025 The precision-indicating merging R factor value Rpim, | 0.509 The precision-indicating merging R factor value Rpim, |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_all | 328643 Total number of measured reflections. | 11421 The total number of reflections measured for this | 37951 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_all | 101826 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 3358 The total number of measured reflections which are symmetry- | 14075 The total number of measured reflections which are symmetry- |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 9.10 The mean of the ratio of the intensities to their | 15.50 The ratio of the mean of the intensities of the reflections | 1.40 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 96.1 The percentage of geometrically possible reflections represented | 94.4 The percentage of geometrically possible reflections represented | 92.1 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 3.2 Overall redundancy for this data set. | 3.4 Redundancy for the current shell. | 2.7 Redundancy for the current shell. |
CC(1/2) | - | - | - |
Refinement | |
---|---|
PDB entry ID _entry.id | 5E9Z |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2015-10-15 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 95.1 - 2.230 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1876 / 0.2253 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | 3EKB |