Data quality metrics extracted from 5dzu.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5DZU at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I04-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I04-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2015-05-17
Detector
_diffrn_detector.type
DECTRIS PILATUS 2M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.917
Software
Data reduction
_software.classification
XDS (31.10.2011)
Data scaling
_software.classification
Aimless (0.5.7)
Phasing
_software.classification
MOLREP (11.3.02)
Refinement
_software.classification
REFMAC (5.8.0131)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
75.458 124.769 37.876 90.00 95.14 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.91700 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
27.900 2.170
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.110 2.110
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.073 0.969
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
19145 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
8.30 0.80
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
96.0 70.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.3 2.5
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5DZU
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-09-26
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
64.4 - 2.120 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1915 / 0.2698
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
3TC2