Data quality metrics extracted from 2dy2.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 2DY2 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
MAX II BEAMLINE I911-3
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
MAX II
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I911-3
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2005-11-12
Detector
_diffrn_detector.type
MARRESEARCH
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.115
Software
Data reduction
_software.classification
MOSFLM
Data scaling #1
_software.classification
SCALA (Phil Evans; pre@mrc-lmb.cam.ac.uk)
Data scaling #2
_software.classification
CCP4 (SCALA)
Refinement
_software.classification
REFMAC (Murshudov, G.N.; ccp4@dl.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
H 3
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
74.996 74.996 153.611 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.11500 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
31.770 51.230 2.380
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.260 7.150 2.260
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.065 0.033 0.294
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 2300 12157
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
15045 440 2174
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
7.90 20.40 2.60
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.8 92.1 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.6 5.2 5.6
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
2DY2
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2006-09-05
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
31.8 - 2.260 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1920 / 0.2410
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB ENTRY 1ZV2