Data quality metrics extracted from 6dxp.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6DXP at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 31-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
31-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2018-02-07
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97931
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA (0.5.32)
Phasing
_software.classification
MOLREP
Refinement
_software.classification
REFMAC
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
133.668 97.323 77.534 90.00 90.71 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97931 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
29.170 29.170 2.610
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.478 7.840 2.480
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.100 0.029 0.642
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.117 0.034 0.777
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.060 0.018 0.432
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
34876 1136 4695
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
5.60 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.6 97.2 91.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.7 3.6 3.1
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.996 0.998 0.736

Refinement
PDB entry ID
_entry.id
6DXP
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-06-29
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 2.478 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2373 / 0.2849
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
1V4B