Data quality metrics extracted from 2dxm.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 2DXM at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
NEUTRON DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
NUCLEAR REACTOR
Source details
_diffrn_source.type
JRR-3M BEAMLINE 1G-B
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
JRR-3M
Beamline
_diffrn_source.pdbx_synchrotron_beamline
1G-B
Temperature [K]
_diffrn.ambient_temp
298.0
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2004-08-20
Detector
_diffrn_detector.type
MACSCIENCE
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
2.9
Software
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
CNS
Refinement
_software.classification
CNS
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
63.79 84.45 54.35 90.00 99.33 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
2.90000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
62.500
High resolution limit [Å]
_reflns.d_resolution_high
2.000
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.099
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
21841
  <I/σ(I)> -
Completeness [%]
_reflns.percent_possible_obs
70.5
  Multiplicity -
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
2DXM
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2006-08-28
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
8.0 - 2.100 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1966 / 0.2602
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
Deoxy Human HB X-ray model(unpublished)