Data quality metrics extracted from 5dw4.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5DW4 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 21-ID-F
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
21-ID-F
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-07-12
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97872
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
67.503 110.393 120.021 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97872 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 1.650
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.620 1.620
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.096 0.573
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
113965 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
30.47 4.02
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
8.4 7.7
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5DW4
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-09-22
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
44.9 - 1.622 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1502 / 0.1767
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS
Starting model
_refine.pdbx_starting_model
4eu9