Data quality metrics extracted from 6duc.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6DUC at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 24-ID-C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
24-ID-C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2018-03-27
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M-F
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9792
Software
Data reduction
_software.classification
MOSFLM (7.2.1)
Data scaling
_software.classification
SCALA (3.3.22)
Phasing #1
_software.classification
PHASER (2.8.2)
Phasing #2
_software.classification
DM (7.0.058)
Refinement
_software.classification
PHENIX (1.13-2998)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
184.261 60.044 67.298 90.00 94.65 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97920 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
91.827 19.703 1.900
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.791 5.690 1.800
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.215 0.109 0.522
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.240 0.120 0.659
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.084 0.039 0.299
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
67697 2179 9357
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
6.60 4.10 1.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.9 96.7 94.3
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
8.0 8.3 4.4
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.945 - 0.797

Refinement
PDB entry ID
_entry.id
6DUC
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-06-20
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
19.7 - 1.791 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1853 / 0.2315
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB entry 4HPJ