Data quality metrics extracted from 5dul.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5DUL at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 19-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
19-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-02-28
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9792
Software
Data reduction
_software.classification
HKL-3000
Data scaling
_software.classification
HKL-3000
Phasing
_software.classification
HKL-3000
Refinement
_software.classification
REFMAC (5.8.0073)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 32
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
121.306 121.306 86.827 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97920 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
35.100 50.000 2.640
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.600 7.050 2.600
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.111 0.065 0.738
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.123 0.075 0.832
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.054 0.036 0.379
Total number of observations
_reflns.pdbx_number_measured_all
230854 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
43562 2104 2185
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
10.20 - 2.00
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.6 96.2 98.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.3 4.3 4.6
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.992 0.871

Refinement
PDB entry ID
_entry.id
5DUL
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-09-18
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
35.0 - 2.600 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1936 / 0.2382
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
3IIE