Data quality metrics extracted from 6dtd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6DTD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I04
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I04
Temperature [K]
_diffrn.ambient_temp
93.15
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2018-05-14
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M-F
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.03320
Software
Data scaling
_software.classification
XDS
Phasing
_software.classification
AutoSol
Refinement
_software.classification
PHENIX
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
90.821 124.646 140.728 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.03320 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
46.654 46.654 1.380
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.340 6.000 1.340
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.127 - 8.369
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.132 - 9.304
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all
3076708 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
209453 4296 2464
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
7.57 - 0.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
80.5 100.0 9.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
10.8 12.9 1.4
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.998 - 0.147

Refinement
PDB entry ID
_entry.id
6DTD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-06-15
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
46.7 - 1.650 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1532 / 0.1850
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD