Data quality metrics extracted from 5dq9.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5DQ9 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
CLSI BEAMLINE 08ID-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
CLSI
Beamline
_diffrn_source.pdbx_synchrotron_beamline
08ID-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2013-04-30
Detector
_diffrn_detector.type
MAR scanner 300 mm plate
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9794
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHASER (2.5.2)
Refinement
_software.classification
REFMAC
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
338.121 52.865 75.391 90.00 100.95 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97940 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
25.000 25.000 2.020
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.950 4.200 1.950
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.092 0.050 0.577
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all
385955 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
94048 9700 9294
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
9.00 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.7 98.8 98.7
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.1 3.8 4.2
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
5DQ9
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-09-14
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
25.0 - 1.950 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2122 / 0.2453
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4ODS