Data quality metrics extracted from 6dpj.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6DPJ at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 22-BM
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
22-BM
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-04-24
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
Aimless (0.5.31)
Phasing
_software.classification
PHENIX
Refinement
_software.classification
PHENIX (1.10.1_2155)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
81.884 37.549 62.400 90.00 97.23 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
19.410 19.410 1.580
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.550 8.490 1.550
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.072 0.050 0.663
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.101 0.070 0.937
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.072 0.050 0.663
Total number of observations
_reflns.pdbx_number_measured_all
42404 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
26181 160 666
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
4.40 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
94.8 82.4 49.7
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
1.6 1.6 1.4
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.989 0.985 0.407

Refinement
PDB entry ID
_entry.id
6DPJ
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-06-09
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
19.4 - 1.550 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1696 / 0.2107
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
pdbid 1ZBL