Data quality metrics extracted from 4dpp.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4DPP at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Australian Synchrotron
Beamline
_diffrn_source.pdbx_synchrotron_beamline
MX2
Temperature [K]
_diffrn.ambient_temp
110
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2011-10-31
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.95369
Software
Data collection
_software.classification
Blu-Ice
Data reduction
_software.classification
XDS
Data scaling
_software.classification
SCALA (3.3.20; 2011/05/18; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Phasing
_software.classification
PHASER (2.3.0; Sat Jul 16 12:08:49 2011 (svn ); Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 41 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
95.81 95.81 174.77 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.95369 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
37.001 37.001 2.050
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.000 8.940 2.000
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.096 0.031 0.710
Rmeas
_reflns_shell.pdbx_Rrim_I_all
- 0.033 0.750
Rpim
_reflns_shell.pdbx_Rpim_I_all
- 0.012 0.240
Total number of observations
_reflns_shell.number_measured_all
- 5952 39173
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
55784 737 4056
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
17.40 16.70 1.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 98.2 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
9.6 8.1 9.7
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4DPP
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-02-14
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
37.0 - 2.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1438 / 0.1813
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given