Data quality metrics extracted from 4dp3.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4DP3 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
Cu FINE FOCUS
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2008-09-01
Detector
_diffrn_detector.type
Nonius Kappa CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54
Software
Data collection
_software.classification
HKL-2000
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK (Zbyszek Otwinowski; hkl@hkl-xray.com)
Refinement
_software.classification
CNS (1.3; 1998; Axel T. Brunger; axel.brunger@yale.edu)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
58.499 156.198 164.586 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
19.900 20.000 2.490
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.400 5.140 2.400
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.047 0.039 0.248
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
57735 6317 5107
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
21.00 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
96.5 99.9 86.7
  Multiplicity - - -
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4DP3
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-02-13
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
19.9 - 2.400 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2050 / 0.2390
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS
Starting model
_refine.pdbx_starting_model
PDB ENTRY 1J3K