Data quality metrics extracted from 2dpw.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 2DPW at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SPRING-8 BEAMLINE BL26B1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SPring-8
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL26B1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2006-03-14
Detector
_diffrn_detector.type
ADSC QUANTUM 210
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97894, 0.97933, 1.0000
Software
Data reduction
_software.classification
CrystalClear
Data scaling
_software.classification
d*TREK (8.0SSI; Oct 31 2003; Pflugrath, J.W.; jwp@RigakuMSC.com)
Phasing #1
_software.classification
SOLVE (2.10; 8-Jun-2005; Tom Terwilliger; terwilliger@LANL.gov)
Phasing #2
_software.classification
RESOLVE (2.10; 09-Aug-2005; Terwilliger, T. C; terwilliger@LANL.gov)
Refinement
_software.classification
CNS (Axel T. Brunger; axel.brunger@yale.edu)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 61 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
76.19 76.19 196.98 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.978940.979331.00000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
38.090 3.000
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.900 2.900
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.084 0.331
  Rmeas - -
  Rpim - -
Total number of observations
_reflns_shell.number_measured_all
- 16205
Total number unique
_reflns.number_obs
8150 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
25.80 10.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
19.1 20.2
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
2DPW
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2006-05-17
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
38.1 - 2.900 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2260 / 0.2810
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD