Data quality metrics extracted from 5dn5.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5DN5 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU MICROMAX-007 HF
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2014-06-16
Detector
_diffrn_detector.type
RIGAKU RAXIS IV++
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
Aimless
Phasing
_software.classification
PHENIX
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
105.70 61.12 65.22 90.0 106.7 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
37.470 2.220
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.150 2.150
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.150 0.830
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
21763 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
10.30 2.50
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.7 99.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.3 7.3
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5DN5
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-09-09
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
29.8 - 2.150 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1749 / 0.2517
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD