Data quality metrics extracted from 6dms.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6DMS at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU MICROMAX-007 HF
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2017-01-11
Detector
_diffrn_detector.type
DECTRIS PILATUS3 R 200K-A
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54178
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
PHASER
Refinement
_software.classification
REFMAC (5.8.0189)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 31 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
156.527 156.527 84.409 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54178 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
29.581 30.000 2.900
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.850 7.690 2.850
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.089 0.046 0.712
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.097 0.051 0.775
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.038 0.021 0.304
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
27694 1484 1300
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
8.40 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.5 99.4 93.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.3 5.3 6.4
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.997 0.946

Refinement
PDB entry ID
_entry.id
6DMS
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-06-05
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
29.6 - 2.850 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2575 / 0.2933
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given