Data quality metrics extracted from 3dkx.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3DKX at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SAD
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID29
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2006-02-14
Detector
_diffrn_detector.type
MAR scanner 345 mm plate
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54179
Software
Data collection
_software.classification
ProDC (ESRF)
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA
Phasing #1
_software.classification
SHELX
Phasing #2
_software.classification
DM
Phasing #3
_software.classification
DMMulti
Refinement
_software.classification
REFMAC (5.2.0019)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 32 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
85.611 85.611 245.530 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.005200.979200.979100.968601.072071.072441.067361.54179 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
24.950 2.850
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.700 2.700
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.100 0.748
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
29572 4243
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
15.10 2.40
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.9 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.5 6.7
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
3DKX
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-06-26
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
24.9 - 2.700 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2281 / 0.2757
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD