Data quality metrics extracted from 1dkr.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1DKR at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU RU200
Temperature [K]
_diffrn.ambient_temp
274
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
1994-05-23
Detector
_diffrn_detector.type
RIGAKU RAXIS II
Software
Data reduction
_software.classification
DENZO
Data scaling #1
_software.classification
CCP4 (AGROVATA
Data scaling #2
_software.classification
ROTAVATA
Data scaling #3
_software.classification
TRUNCATE
Phasing #1
_software.classification
MLPHARE
Phasing #2
_software.classification
DM
Model building
_software.classification
DM
Refinement
_software.classification
X-PLOR (3.1)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 63
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
115.61 115.61 107.75 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
100.000
High resolution limit [Å]
_reflns.d_resolution_high
2.200
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.077
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
40947
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
9.00
Completeness [%]
_reflns.percent_possible_obs
98.8
Multiplicity
_reflns.pdbx_redundancy
3.4
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
1DKR
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
1999-12-08
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
30.0 - 2.300 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1800 / 0.2400