Data quality metrics extracted from 5djm.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5DJM at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 14-BM-C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
14-BM-C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2004-07-27
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9
Software
Data scaling #1
_software.classification
Aimless (0.5.8)
Data scaling #2
_software.classification
XDS
Phasing
_software.classification
PHASER (2.5.3)
Refinement
_software.classification
PHENIX
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
77.517 90.130 68.943 90.00 97.85 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.90000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
46.880 46.880 1.940
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.900 9.110 1.900
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.076 - 0.094
  Rmeas - - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.030 0.047 0.327
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
268519 1144 17634
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
36278 246 2321
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
18.10 34.90 2.90
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.2 68.3 98.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.4 4.7 7.6
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.998 0.957 0.862

Refinement
PDB entry ID
_entry.id
5DJM
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-09-02
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
28.0 - 1.900 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2066 / 0.2398
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
5GSS