Data quality metrics extracted from 4dix.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4DIX at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU MICROMAX-007 HF
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2008-06-20
Detector
_diffrn_detector.type
RIGAKU RAXIS IV++
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.5418
Software
Data collection
_software.classification
CrystalClear
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK (Zbyszek Otwinowski; hkl@hkl-xray.com)
Phasing
_software.classification
SHARP
Refinement
_software.classification
REFMAC (5.6.0117; Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 31 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
76.329 76.329 161.856 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
20.000 20.000 1.730
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.700 4.600 1.700
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.050 0.032 0.565
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
58454 3260 2758
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
19.60 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
95.9 98.9 92.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
10.8 9.5 10.5
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4DIX
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-02-01
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
19.8 - 1.700 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2068 / 0.2330
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD