Data quality metrics extracted from 3dip.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3DIP at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ALS BEAMLINE 8.3.1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ALS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
8.3.1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2008-05-09
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97958
Software
Data collection
_software.classification
MAR345 (CCD)
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA (3.2.25; 21/9/2006; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Phasing
_software.classification
SHELXCD
Model building
_software.classification
SHELXE
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
F 4 3 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
282.292 282.292 282.292 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97958 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
47.727 2.640
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.500 2.500
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.103 0.295
  Rmeas - -
  Rpim - -
Total number of observations
_reflns_shell.number_measured_all
- 208049
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
33847 4831
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
30.50 12.90
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
42.2 43.1
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
3DIP
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-06-20
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
20.0 - 2.500 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2150 / 0.2750
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD