Data quality metrics extracted from 5dhk.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5DHK at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ALS BEAMLINE 8.2.1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ALS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
8.2.1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2014-02-06
Detector
_diffrn_detector.type
ADSC QUANTUM 315r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.12949
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
Aimless
Phasing
_software.classification
PHENIX
Refinement
_software.classification
PHENIX
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 41 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
126.69 126.69 122.00 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.12949 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.420 2.517
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.430 2.430
Rmerge
_reflns_shell.Rmerge_I_obs
- 1.018
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
36829 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
32.44 1.26
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
96.9 84.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
8.5 3.2
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5DHK
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-08-31
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
50.4 - 2.430 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1942 / 0.2327
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
5EAS