Data quality metrics extracted from 4dgl.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4DGL at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID23-2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID23-2
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2011-04-09
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.873
Software
Data scaling #1
_software.classification
SCALA (3.3.20; 2011/05/18; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Data scaling #2
_software.classification
XSCALE
Phasing
_software.classification
PHASER (Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 63
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
175.652 175.652 96.260 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.87300 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
152.119 44.863 3.160
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
3.000 9.490 3.000
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.122 0.027 0.990
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 20037 94661
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
34036 1127 4928
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
23.90 94.60 3.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 99.1 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
19.1 17.8 19.2
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4DGL
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-01-26
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
152.1 - 3.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1953 / 0.2217
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given