Data quality metrics extracted from 3dg9.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3DG9 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I04
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I04
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2007-03-13
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.0
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XDS
Phasing
_software.classification
MLPHARE (Eleanor J. Dodson; ccp4@ccp4.ac.uk)
Refinement #1
_software.classification
PHENIX
Refinement #2
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
38.666 65.849 42.209 90.00 110.82 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
50.000
High resolution limit [Å]
_reflns.d_resolution_high
1.500
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.093
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
30804
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
8.50
Completeness [%]
_reflns.percent_possible_obs
97.2
Multiplicity
_reflns.pdbx_redundancy
3.3
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
3DG9
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-06-13
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
39.5 - 1.500 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1550 / 0.1880