Data quality metrics extracted from 5dfl.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5DFL at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
AUSTRALIAN SYNCHROTRON BEAMLINE MX1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Australian Synchrotron
Beamline
_diffrn_source.pdbx_synchrotron_beamline
MX1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2014-08-24
Detector
_diffrn_detector.type
ADSC QUANTUM 210
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9537
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
Aimless (0.1.29)
Phasing
_software.classification
PHASER (2.5.2)
Refinement
_software.classification
REFMAC (5.8.0103)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
146.324 37.557 61.001 90.00 90.43 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.95370 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
47.020 47.020 2.160
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.100 8.910 2.100
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.173 0.031 1.692
  Rmeas - - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.067 0.013 0.652
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
146692 1756 11885
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
19503 288 1552
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
10.80 44.80 1.50
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.2 99.2 98.3
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.5 6.1 7.7
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.997 0.999 0.617

Refinement
PDB entry ID
_entry.id
5DFL
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-08-27
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
47.0 - 2.100 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1951 / 0.2348
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
1UBQ and 1YLA