Data quality metrics extracted from 5df5.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5DF5 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 21-ID-D
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
21-ID-D
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2013-06-22
Detector
_diffrn_detector.type
MAR scanner 300 mm plate
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.07812
Software
Data reduction
_software.classification
XDS (September 26, 2012)
Data scaling
_software.classification
Aimless (0.1.29)
Phasing
_software.classification
PHENIX (1.8.1)
Refinement
_software.classification
REFMAC (5.8.0107)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
34.609 51.739 61.748 110.01 93.09 91.88
Wavelength
_diffrn_radiation_wavelength.wavelength
1.07812 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
57.881 1.335
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.301 1.301
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.081 0.504
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
90455 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
15.30 2.60
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
96.6 89.4
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.3 4.2
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5DF5
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-08-26
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
57.9 - 1.301 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1480 / 0.1777
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
5C0Z