Data quality metrics extracted from 4df9.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4DF9 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRL BEAMLINE BL11-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL11-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2011-07-22
Detector
_diffrn_detector.type
MARMOSAIC 325 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.91837,0.97941,0.97899
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE (December 6, 2010; Wolfgang Kabsch)
Phasing #1
_software.classification
SHELX (George M. Sheldrick; gsheldr@shelx.uni-ac.gwdg.de)
Phasing #2
_software.classification
SHARP (Eric de La Fortelle; sharp-develop@globalphasing.com)
Phasing #3
_software.classification
SHELXD
Model building
_software.classification
MolProbity (3beta29; D.C. & J.S. Richardson lab; molprobity@kinemage.biochem.duke.edu)
Refinement #1
_software.classification
BUSTER-TNT (2.10.0; Gerard Bricogne; buster-develop@GlobalPhasing.com)
Refinement #2
_software.classification
BUSTER (2.10.0)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
238.73 92.82 173.89 90.00 125.26 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.918370.979410.97899 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
48.732 48.732 2.250
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.170 4.660 2.170
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.110 0.040 0.765
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_obs
- 62245 62978
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
162812 16756 16568
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
10.11 27.40 1.90
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.0 98.8 98.7
  Multiplicity - - -
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4DF9
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2012-01-23
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
48.7 - 2.170 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1561 / 0.1878
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD