Experiment | |
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Method _exptl.method | ELECTRON CRYSTALLOGRAPHY The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | ELECTRON MICROSCOPE The general class of the radiation source. |
Detector technology _diffrn_detector.detector | POSITION SENSITIVE DETECTOR The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2021-12-14 The date of data collection. |
Detector _diffrn_detector.type | TVIPS TEMCAM-F416 The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.0197 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | XDS (Wolfgang Kabsch; Wolfgang.Kabsch@mpimf-heidelberg.mpg.de) The classification of the program according to its |
Data scaling _software.classification | XSCALE (Wolfgang Kabsch) The classification of the program according to its |
Phasing _software.classification | SHELXD The classification of the program according to its |
Refinement _software.classification | PHENIX (Paul D. Adams; PDAdams@lbl.gov) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | C 1 2 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 23.14 Unit-cell length a corresponding to the structure reported in 4.84 Unit-cell length b corresponding to the structure reported in 19.79 Unit-cell length c corresponding to the structure reported in 90.000 Unit-cell angle alpha of the reported structure in degrees. 107.048 Unit-cell angle beta of the reported structure in degrees. 90.000 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.01970 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 18.920 The largest value in angstroms for the interplanar spacings | 8.000 The highest value in angstroms for the interplanar spacings | 1.000 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 0.900 The smallest value in angstroms for the interplanar spacings | 5.000 The smallest value in angstroms for the interplanar spacings | 0.900 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.113 The R value for merging intensities satisfying the observed | 0.034 The value of Rmerge(I) for reflections classified as 'observed' | 0.322 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.129 The redundancy-independent merging R factor value Rrim, | 0.047 The redundancy-independent merging R factor value Rrim, | 0.366 The redundancy-independent merging R factor value Rrim, |
Rpim | - | - | - |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_obs | 5980 Total number of measured reflections. | 8 The number of reflections classified as 'observed' | 1639 The number of reflections classified as 'observed' |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 1237 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 3 The total number of measured reflections classified as 'observed' | 332 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 8.63 The mean of the ratio of the intensities to their | 13.06 The ratio of the mean of the intensities of the reflections | 5.01 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 71.0 The percentage of geometrically possible reflections represented | 50.0 The percentage of geometrically possible reflections represented | 72.2 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 4.8 Overall redundancy for this data set. | 2.7 Redundancy for the current shell. | 4.9 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.991 The Pearson's correlation coefficient expressed as a decimal value | 1.000 The Pearson's correlation coefficient expressed as a decimal value | 0.643 The Pearson's correlation coefficient expressed as a decimal value |
Refinement | |
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PDB entry ID _entry.id | 8DDG |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2022-06-18 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 5.8 - 0.900 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1692 / 0.1851 |
Structure solution method _refine.pdbx_method_to_determine_struct | FOURIER SYNTHESIS |