Data quality metrics extracted from 5ddd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5DDD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 21-ID-F
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
21-ID-F
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2014-04-10
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97872
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing
_software.classification
MOLREP
Refinement
_software.classification
REFMAC (5.7.0032)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
48.307 79.713 124.811 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97872 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 2.180
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.140 5.810 2.140
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.148 0.083 0.824
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all
179804 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
26687 1502 1312
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
4.90 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.0 99.3 97.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.7 6.3 6.4
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
5DDD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-08-24
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
41.4 - 2.140 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2010 / 0.2480
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
4GPQ