Data quality metrics extracted from 3ddk.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3DDK at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ALS BEAMLINE 4.2.2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ALS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
4.2.2
Temperature [K]
_diffrn.ambient_temp
173
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2006-01-13
Detector
_diffrn_detector.type
NOIR-1
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.00
Software
Data reduction
_software.classification
d*TREK
Data scaling
_software.classification
d*TREK
Phasing
_software.classification
CNS
Refinement
_software.classification
CNS
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 43 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
74.36 74.36 288.05 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
52.580 52.580 2.330
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.250 4.850 2.250
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.051 0.035 0.243
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 56328 3435
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
35017 4299 1598
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
33.00 54.60 3.00
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
88.5 99.9 41.4
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
9.3 12.6 1.8
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3DDK
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2008-06-05
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
52.6 - 2.250 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2010 / 0.2340
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
1RA6 - poliovirus polymerase