Data quality metrics extracted from 8dce.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 8DCE at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 22-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
22-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2021-11-24
Detector
_diffrn_detector.type
DECTRIS EIGER2 S 16M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XDS
Phasing
_software.classification
PHASER
Refinement #1
_software.classification
PHENIX (1.19.2_4158)
Refinement #2
_software.classification
PHENIX (1.19.2_4158)
General information
Spacegroup name
_symmetry.space_group_name_H-M
I 2 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
81.63 97.31 141.18 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
19.780
High resolution limit [Å]
_reflns.d_resolution_high
2.000
  Rmerge -
Rmeas
_reflns.pdbx_Rrim_I_all
0.125
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
38255
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
12.83
Completeness [%]
_reflns.percent_possible_obs
99.7
Multiplicity
_reflns.pdbx_redundancy
5.7
CC(1/2)
_reflns.pdbx_CC_half
0.997

Refinement
PDB entry ID
_entry.id
8DCE
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2022-06-16
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
19.8 - 2.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1772 / 0.2030
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB entry 7BWJ