Data quality metrics extracted from 7dca.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 7DCA at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU MICROMAX-007 HF
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2019-09-05
Detector
_diffrn_detector.type
OXFORD ONYX CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54
Software
Data reduction
_software.classification
CrysalisPro
Data scaling
_software.classification
CrysalisPro
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.10.1_2155)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 61
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
119.35 119.35 39.79 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
21.672 2.210
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.100 2.100
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.170 0.806
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
19223 2785
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
12.10 2.40
Completeness [%]
_reflns.percent_possible_obs
99.9 -
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
8.6 5.6
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.992 0.689

Refinement
PDB entry ID
_entry.id
7DCA
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2020-10-23
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
21.7 - 2.100 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1720 / 0.2199
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
7DBF