Data quality metrics extracted from 5dcm.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5DCM at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID29
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID29
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2014-11-12
Detector
_diffrn_detector.type
MAR CCD 165 mm
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.07145
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.9_1692)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
56.38 60.46 56.85 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.07145 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
100.000
High resolution limit [Å]
_reflns.d_resolution_high
1.600
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.056
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
124813
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
21.60
Completeness [%]
_reflns.percent_possible_obs
98.8
Multiplicity
_reflns.pdbx_redundancy
11.7
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
5DCM
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-08-24
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
56.9 - 1.600 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1868 / 0.2188
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD