Data quality metrics extracted from 6dbn.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6DBN at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 17-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
17-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2014-06-18
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.00
Software
Data scaling
_software.classification
Aimless (0.3.5)
Refinement
_software.classification
BUSTER (2.11.5)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
45.510 88.422 145.914 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
72.960 3.040
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.480 2.480
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.081 0.368
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.090 0.408
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.037 0.172
Total number of observations
_reflns.pdbx_number_measured_all
57973 -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
10653 4672
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
15.90 -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.4 96.7
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.4 5.0
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.998 0.931

Refinement
PDB entry ID
_entry.id
6DBN
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-05-03
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
37.8 - 2.480 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1860 / 0.2619