Data quality metrics extracted from 5dbq.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5DBQ at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SEALED TUBE
Source details
_diffrn_source.type
BRUKER D8 QUEST
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2015-07-02
Detector
_diffrn_detector.type
BRUKER PHOTON 100
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.5418
Software
Data collection
_software.classification
PROTEUM PLUS (PROTEUM2 (Bruker))
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XDS
Phasing #1
_software.classification
MrBUMP
Phasing #2
_software.classification
MOLREP
Phasing #3
_software.classification
PHASER
Model building
_software.classification
Coot
Refinement
_software.classification
BUSTER (2.10.0)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
107.71 28.98 79.86 90.00 128.32 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 2.070
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.950 1.950
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.127 0.735
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
14272 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
12.00 2.00
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.4 98.2
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.2 5.1
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5DBQ
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2015-08-21
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
31.3 - 1.950 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2098 / 0.2503
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB 1XWB