Data quality metrics extracted from 8da1.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 8DA1 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 22-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
22-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2021-10-10
Detector
_diffrn_detector.type
DECTRIS EIGER X 16M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.0
Software
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
BALBES
Refinement
_software.classification
PHENIX (dev_5245)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
148.326 63.862 77.437 90.00 101.57 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
30.000 30.000 2.800
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.670 5.800 2.700
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.248 0.157 1.601
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.270 0.172 1.817
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.103 0.069 0.839
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
19031 1955 1846
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
7.40 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.7 98.2 97.3
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.7 6.8 4.2
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.969 0.306

Refinement
PDB entry ID
_entry.id
8DA1
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2022-06-12
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
29.5 - 2.670 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1957 / 0.2528
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
Model found by BALBES software using input sequence